Divergent responses of Atlantic cod to ocean acidification and food limitation

In order to understand the effect of global change on marine fishes, it is imperative to quantify the effects on fundamental parameters such as survival and growth. Larval survival and recruitment of the Atlantic cod (Gadus morhua) were found to be heavily impaired by end‐of‐century levels of ocean acidification. Here, we analysed larval growth among 35–36 days old surviving larvae, along with organ development and ossification of the skeleton. We combined CO₂ treatments (ambient: 503 µatm, elevated: 1,179 µatm) with food availability in order to evaluate the effect of energy limitation in addition to the ocean acidification stressor. As expected, larval size (as a proxy for growth) and skeletogenesis were positively affected by high food availability. We found significant interactions between acidification and food availability. Larvae fed ad libitum showed little difference in growth and skeletogenesis due to the CO₂ treatment. Larvae under energy limitation were significantly larger and had further developed skeletal structures in the elevated CO₂ treatment compared to the ambient CO₂ treatment. However, the elevated CO₂ group revealed impairments in critically important organs, such as the liver, and had comparatively smaller functional gills indicating a mismatch between size and function. It is therefore likely that individual larvae that had survived acidification treatments will suffer from impairments later during ontogeny. Our study highlights important allocation trade‐off between growth and organ development, which is critically important to interpret acidification effects on early life stages of fish.     

Pathogens,faecal indicators and human-specific microbial source-tracking markers in sewage

The objective of this review is to assess the current state of knowledge of pathogens, general faecal indicators and human-specific microbial source tracking markers in sewage. Most of the microbes present in sewage are from the microbiota of the human gut, including pathogens. Bacteria and viruses are the most abundant groups of microbes in the human gut microbiota. Most reports on this topic show that raw sewage microbiological profiles reflect the human gut microbiota. Human and animal faeces share many commensal microbes as well as pathogens. Faecal-orally transmitted pathogens constitute a serious public health problem that can be minimized through sanitation. Assessing both the sanitation processes and the contribution of sewage to the faecal contamination of water bodies requires knowledge of the content of pathogens in sewage, microbes indicating general faecal contamination and microbes that are only present in human faecal remains, which are known as the human-specific microbial source-tracking (MST) markers. Detection of pathogens would be the ideal option for managing sanitation and determining the microbiological quality of waters contaminated by sewage; but at present, this is neither practical nor feasible in routine testing. Traditionally, faecal indicator bacteria have been used as surrogate indicators of general faecal residues. However, in many water management circumstances, it becomes necessary to detect both the origin of faecal contamination, for which MST is paramount, and live micro-organisms, for which molecular methods are not suitable. The presence and concentrations of pathogens, general faecal indicators and human-specific MST markers most frequently reported in different areas of the world are summarized in this review.     

以“环境微生物学”为载体的环境生态工程专业本科生科创能力培养

环境生态工程是一个设立较晚的新专业,其基本的教学体系和专业课程设计还有待摸索和完善。"环境微生物学"作为环境生态工程专业普遍设置的专业必修课,其授课内容和形式如何适应专业整体的培养需求是一个值得探讨的问题。我们结合所在学校、学院的特点和优势,提出将融入海洋特色和生态学思想的"环境微生物学"作为载体,结合课上理论教学、学生课堂报告、课下专题培训和实验技能培养等形式,培养环境生态工程专业本科生的科创能力。这可为同专业开设"环境微生物学"课程的教师提供教学参考,也可以为其他院校环境生态工程专业本科生科创能力的培养提供借鉴。     

产铁载体菌株的分离、培养条件优化及初步应用

【背景】微生物菌肥是推动绿色农业发展的关键。铁载体是由植物根际微生物产生的一类低分子量金属离子螯合物,可通过螯合Fe³⁺促进植物生长,因此,筛选具有高产铁载体功能的菌种意义重大。【目的】从植株根际土壤中分离高产铁载体微生物,为开发植物根际促生菌提供种质资源。【方法】采用chrome azurol sulfonate （CAS）平板覆盖法分离、纯化获得高产铁载体真菌菌株,通过形态观察及18S r RNA基因序列分析对菌株进行鉴定,在此基础上,采用单因素实验法优化其产铁载体条件,并通过上海青水培试验,初步考察菌株的促生效应。【结果】分离获得4株产铁载体真菌菌株,其中一株菌产铁载体能力相对较强,编号为RL1,初步鉴定为黑曲霉（Aspergillus niger）。RL1的最佳产铁载体培养条件为：初始p H 5.0,碳源葡萄糖含量5 g/L,温度20°C,培养时间5 d,转速60 r/min。随着RL1菌悬液浓度的增加,上海青植株的鲜重和叶片光合色素含量均逐渐增大。当施加最大浓度孢子菌悬液（3.2×10⁸ CFU/m L）时,植株的总鲜重量和茎叶鲜重...     

情景模拟在“医学微生物学”翻转课堂教学中的应用

翻转课堂是实现以学生为中心、提升学生自主学习能力的重要教学方法。随着线上课程的开展和学习平台技术的成熟,学生已能在课前获得足够的资源。然而,习惯于灌输式教育的学生仍缺乏自主学习的动力和方法。为此,我们教研团队尝试采用情景模拟的课堂活动设计来突破翻转环节实施的难点。研究发现,参考临床案例撰写剧本的过程能有效提升学生的自学兴趣和能力。学生课前在线预习时长和章节访问次数,以及参考资料阅读率和小组讨论时长均显著增加。课堂上,学生将课前所学知识在模拟实践中进行练习,促进了师生互动,帮助学生加深对知识的理解,提升学习成绩和满意度,同时也培养了学生的团队合作精神,建立临床思维,提升职业兴趣和能力。因此,情景模拟的融入实现了翻转课堂教学中“课前学”和“课上习”的教学闭环,为进一步推进翻转课堂的开展提供参考。     

探索以“霍乱弧菌检测虚拟仿真实验”为载体的混合式实验教学模式

虚拟仿真实验是一种现代信息化和智慧教学的重要方法,对高等医学院校教学质量的发展起到重要的推进作用。我们自主开发建设的“霍乱弧菌检测与防控虚拟仿真实验”,既弥补了因生物安全问题不能开展的实验教学,也解决了微生物学检验实验教学中存在的操作标准化问题。采用“三步进阶”混合教学模式,实现以“学生为中心”的师生互动模式,创建“设计性实验报告”,与育人元素有机结合,培育医学生的职业使命感。细化考核标准,实现过程性评价。探索课前启发铺垫、课中内化升华、课后巩固拓展混合式实验教学模式,有效提高学生的实验技能,实现知行合一、素能共育的教学目标。     

模拟地表火行为对燃烧剩余物水溶性碳氮的影响

燃烧剩余物是火烧迹地土壤表面必然存在的残留物,可以通过降水过程以及地表径流释放其所含有的矿物质和有机质至土壤生态系统,从而在一定时间内持续地对火后生态系统恢复过程造成影响。但不同火行为下,相同的可燃物所产生的燃烧剩余物可能具有不同的生态学功能,为了认知火行为对燃烧剩余物的影响,进一步了解二者对火烧迹地生态恢复过程中养分循环和能量流动的潜在影响,探究了火行为对燃烧剩余物水溶性碳氮化学计量特征的影响。以红松人工林地表可燃物为实验材料,通过设置不同坡度和含水率为火行为的驱动因子,进行了森林可燃物床层地表上坡火和下坡火的室内模拟燃烧实验。用独立样本T检验、单因素方差分析、多因素方差分析探究了火环境对燃烧剩余物水溶性碳氮和火行为的影响,用基于距离的冗余分析(db-RDA)探究了火行为对燃烧剩余物水溶性碳氮化学计量特征的影响。上坡火实验组的燃烧剩余物水溶性碳氮含量明显高于下坡火实验组(P<0.01);5°实验组中,燃烧剩余物的水溶性碳含量随着可燃物预设含水率的升高而升高(P<0.05)。进一步的数据分析发现火行为与燃烧剩余物水溶性碳氮化学计量特征关系密切,火焰宽度是影响燃烧剩余物水溶性...     

Integrative taxonomy recognized a new cryptic species within Stipa grandis from Loess Plateau of China

Stipa shanxiensis, a cryptic species within Stipa grandis that originated from central and western China, is described based on morphological, genomic, and ecological data from field and common garden experiments. Stipa shanxiensis morphologically resembles S. grandis, although phylogenetically it is closely related to the less morphologically similar Stipa baicalensis and Stipa krylovii. Of the eight significant morphological differences between S. shanxiensis and S. grandis, the two, cauline ligules longer than 2 cm with a filiform apex, and hairs shorter than 0.2 mm on the adaxial surface of the cauline uppermost leaves can be used to distinguish the species. Results from a common garden experiment verified that the two diagnostic characteristics were relatively stable and less morphologically plastic in response to environmental variation. Furthermore, a significant ecological divergence was found between S. shanxiensis and S. grandis, such that the former preferred warmer and more humid climates, and their predicted distribution was generally separated. Taken together, our results highlight that the integrative taxonomic approach was valuable for recognizing a new cryptic species in Stipa. In particular, we find that common garden experiments involving the effects of growth stage and characteristic position helped to morphologically diagnose cryptic species. These findings may also facilitate our understandings of ecological adaption and phenotypic plasticity in response to environmental change.     

‘Ten Years After’—a long-term settlement and bioerosion experiment in an Arctic rhodolith bed (Mosselbukta,Svalbard)

Rhodolith beds and bioherms formed by ecosystem engineering crustose coralline algae support the northernmost centres of carbonate production, referred to as polar cold-water carbonate factories. Yet, little is known about biodiversity and recruitment of these hard-bottom communities or the bioeroders degrading them, and there is a demand for carbonate budgets to include respective rates of polar carbonate build-up and bioerosion. To address these issues, a 10-year settlement and bioerosion experiment was carried out at the Arctic Svalbard archipelago in and downslope of a rhodolith bed. The calcifiers recorded on experimental settlement tiles (56 taxa) were dominated by bryozoans, serpulids and foraminiferans. The majority of the bioerosion traces (30 ichnotaxa) were microborings, followed by attachment etchings and grazing traces. Biodiversity metrics show that calcifier diversity and bioerosion ichnodiversity are both elevated in the rhodolith bed, if compared to adjacent aphotic waters, but these differences are statistically insignificant. Accordingly, there were only low to moderate dissimilarities in the calcifier community structure and bioerosion trace assemblages between the two depth stations (46 and 127 m), substrate orientations (up- and down-facing) and substrate types (PVC and limestone), in that order of relevance. In contrast, surface coverage as well as the carbonate accretion and bioerosion rates were all significantly elevated in the rhodolith bed, reflecting higher abundance or size of calcifiers and bioerosion traces. All three measures were highest for up-facing substrates at 46 m, with a mean coverage of 78.2% (on PVC substrates), a mean accretion rate of 24.6 g m^?2  year^?1 (PVC), and a mean bioerosion rate of ?35.1 g m^?2 year^?1 (limestone). Differences in these metrics depend on the same order of factors than the community structure. Considering all limestone substrates of the two platforms, carbonate accretion and bioerosion were nearly in balance at a net rate of ?2.5 g m^?2 year^?1. A latitudinal comparison with previous settlement studies in the North Atlantic suggests that despite the harsh polar environment there is neither a depletion in the diversity of hard-bottom calcifier communities nor in the ichnodiversity of grazing traces, attachment etchings and microborings formed by organotrophs. In contrast, microborings produced by phototrophs are strongly depleted because of limitations in the availability of light (condensed photic zonation, polar night, shading by sea ice). Also, macroborings were almost absent, surprisingly. With respect to carbonate production, the Svalbard carbonate factory marks the low end of a latitudinal gradient while bioerosion rates are similar or even higher than at comparable depth or photic regime at lower latitudes, although this might not apply to shallow euphotic waters (not covered in our experiment), given the observed depletion in bioeroding microphytes and macroborers. While echinoid grazing is particularly relevant for the bioerosion in the rhodolith bed, respective rates are far lower than those reported from tropical shallow-water coral reefs. The slow pace of carbonate production but relatively high rates of bioerosion (both promoted by low carbonate supersaturation states in Arctic waters), in concert with high retention of skeletal carbonates on the seafloor and no calcite cements forming in open pore space created by microborers, suggest a low fossilisation potential for polar carbonates, such as those formed in the Mosselbukta rhodolith beds.